Evolutionary Game Theory  - Lecture 2

 

Population Genetics Primer

 

Vocabulary:

Allele               - One of a pair (or more) versions of a gene that occupies a specific position (locus) on a specific chromosome.

            Diploid           - Individual has two of each type of chromosome.

Homozygous  - Individual has two copies of the same allele.

  Ex. AA or aa

            Heterozygous - Individual has one copy of two different alleles.

                                      Ex.  Aa

            Genotype        - The specific alleles an individual has.

                                       Ex.  AA (dominant),  Aa (heterozygous), or aa (recessive)

Phenotype      - The observable characteristics of an individual, based on genetic and environmental factors.

                           Ex.  Brown hair, orange throat, AB blood type

 

Two kinds of reproduction

Asexual:  Individual gets all genetic material from one parent.  Progeny are genetically identical to parent.  Perfect replicator.

 

Sexual:    Individual gets genetic material from two parents.  For each gene, an individual receives one allele from each parent.

                 Haploid: inherit from both, but only across many loci

                 Diploid: inherit from both for all loci

 

Autosomal inheritance  (Does not hold true for sex chromosomes)   

            Hardy-Weinberg Law:

In a population where individuals interbreed randomly, gene frequencies and genotype ratios remain constant from generation to generation.

            Assumptions:

                        Large population

                        Population is diploid

                        Individuals interbreed randomly

 

 

P(Mating)

P(AA)

P(Aa)

P(aa)

AA x AA

Dm Df

1

0

0

AA x Aa

Dm Hf

0.5

0.5

0

AA x Aa

Hm Df

0.5

0.5

0

AA x aa

Dm Rf

0

1

0

AA x aa

Rm Df

0

1

0

Aa x Aa

Hm Hf

0.25

0.5

0.25

Aa x aa

Hm Rf

0

0.5

0.5

Aa x aa

Rm Hf

0

0.5

0.5

aa x aa

Rm Rf

0

0

1

 

The probability of producing a particular genotype is the summation of the probability of a particular mating combination times the probability of that mating producing the particular genotype.

 

See BarryÕs Excel spreadsheet for details on calculating multi-generational probabilities.

 

DÕ = D2 + ½  (2DH) + ¼ H2

DÕ = (D + ½ H)2

DÕ = p2

 

HÕ = 2pq

RÕ = q2

 

QED