Publications from the Doak Lab by Graduate Students, Undergraduate Students, and Post Docs
Orange: graduate students and postdocs from Doak Lab
Underlined: graduate students or postdocs in other labs or universities who worked with Doak or in our lab
Italicized: undergraduate students
Note that publications on which Doak is an author are also in my CV, but we include them here to show the range of student publications and collaborators working with our lab.
Bolger, D.T., W.D. Newmark, T.A. Morrison, and D.F. Doak. 2008. The need for integrative approaches to understand and conserve migratory ungulates. Ecology Letters 11:63-77.
Crooks, K.R., M.A. Sanjayan, and D.F. Doak. 1998. New insights on cheetah conservation through demographic modeling. Conservation Biology 12: 889-895.
Doak, D. F., J. A. Estes, B. S. Halpern, Ute Jacob, D. R. Lindberg, J. Lovvorn, D. H. Monson, M. T. Tinker, T. M. Williams, J. T. Wootton, I. Carroll, M. Emmerson, F. Micheli, and M. Novak. 2008. Understanding and predicting ecological dynamics: are major surprises inevitable? Ecology (Concepts and Synthesis section) In press.
Doak, D. F., V. Bakker, M. Finkelstein, B. Sullivan, R. Lewison, B. Keitt, J.Arnold, J. Croxall, Fiorenza Micheli, M. Sanjayan. 2007. Compensatory mitigation for marine bycatch will do harm, not good. Frontiers in Ecology and the Environment 5: 350–351.
Doak, D.F. and M.G. Loso. 2003. Effects of grizzly bear digging on alpine plant community structure. Arctic, Antarctic, and Alpine Research 35:421-428.
Doak, D.F., D. Bigger, E. Harding-Smith, M.A. Marvier, R. O’Malley, and D.M. Thomson. 1998. The statistical inevitability of stability-diversity relationships in community ecology. American Naturalist 151:264-276.
Doak, D.F., D.M. Thomson, and E.S. Jules. 2002. PVA for Plants: Understanding the Demographic Consequences of Seed Banks for Population Health. Pages 312-337 in: S. R. Beissinger and D. R. McCullough (Eds.), Population Viability Analysis. Univ. of Chicago Press, Chicago, IL, USA.
Donlan, C.J., J. Knowlton, D. F. Doak, and N. Biavaschi. 2005. Nested communities, invasive species and Holocene extinctions: evaluating the power of a potential conservation tool. Oecologia Online First: July 16, 2005
Elderd B.D. 2003. The impact of changing flow regimes on riparian vegetation and the riparian species Mimulus guttatus. Ecological Applications. 13:1610-1625.
Elderd, B.,and D,F. Doak. 2006. Comparing the direct and community-mediated effects of disturbance on plant population dynamics: Flooding, herbivory, and Mimulus guttatus. Journal of Ecology 94: 656–669
Elderd, B.,and D,F. Doak. revision in review. Comparing the direct and community-mediated effects of disturbance on plant population dynamics: Flooding, herbivory, and Mimulus guttatus. Journal of Ecology.
Elderd, B., P. Shahani,and D.F. Doak. 2003. The problems and potential of count-based PVA. pp. 173-202 in C.A. Brigham and M.W. Schwartz (eds.), Population Viability in Plants. Spring-Verlag, Berlin.362 pp.
Elderd, B., Vos, T., and Los Huertos, M. 1999. Green Revolutions (Letter to the Editor). Science: 283: 1267.
Estes, J.A. , M.T. Tinker, T.M. Williams, and D.F. Doak. 1998. Killer whale predation on sea otters linking oceanic and nearshore ecosystems. Science 282 (N5388):473-476.
Estes, J.A., E.M. Danner, D.F. Doak, B. Konar, A.M. Springer, P.T. Steinberg, M.T. Tinker, and T.M. Williams. 2004. Complex trophic interactions in kelp forest ecosystems. Bulletin of Marine Science 74:621-638.
Forbis, T.A., and D.F. Doak. 2004.Seedling Establishment and Life History Tradeoffs in Alpine Plants. American Journal of Botany 91:1147-1153.
Forde, S.E., and D.F. Doak. 2004. Multitrophic interactions mediate recruitment variability in a rocky intertidal community. Marine Ecology Progress Series 275:33-45.
Gerber, L.R., M.T. Tinker, D.F. Doak, J.A. Estes, and D.A. Jessup. 2004. Mortality sensitivity in life-stage simulation analysis: A case study of Southern sea otters. Ecological Applications 14:1554-1565.
Gross, K., W. F. Morris, M. S. Wolosin, and D. F. Doak. 2006. Modeling vital rates improves estimation of population projection matrices. Population Ecology 48:79-89.
Hansen, E.M., Goheen, D.J., Jules, E.S., and Ullian, B. 2000. Managing Port-Orford-cedar and the introduced pathogen Phytophthora lateralis. Plant Disease 84: 4-14.
Harding E.K., D.F. Doak, and J.D. Albertson. Evaluating the effectiveness of predator control: the non-native red fox as a case study. Conservation Biology15:1114-1122
Harding, E.K. 2002. Modelling the influence of seasonal inter-habitat movements by an ecotone rodent. Biological Conservation. 104:227-237.
Harding, E.K. and Stevens, E. 2002. Using stable isotopes to assess seasonal patterns of avian predation across a terrestrial-marine landscape. Oecologia 129:436-444.
Harding, E.K., Crone, E.E., Elderd, B.D., Hoekstra, J.M., McKerrow, A.J., Perrine, J.D., Regetz, J., Rissler, L.J., Stanley, A.G., and Walters, E.L. 2001. The scientific foundations of habitat conservation plans: A quantitative assessment. Conservation Biology 15:488-500.
Jules, E.S. and P. Shahani. 2003. A broader ecological context to habitat fragmentation: Why matrix habitat is more important than we thought. Journal of Vegetation Science 14:459-464
Jules, E.S., E.J. Frost, L.S. Mills, and D.A. Tallmon. 1999. Ecological consequences of forest fragmentation in the Klamath region. Natural Areas Journal 19:368-378
Jules, E.S., Kauffman, M.J., Ritts, W.D., Carroll A.L. 2002. Spread of an invasive pathogen over a variable landscape: A nonnative root rot on Port Orford cedar. Ecology 83:3167-3181.
Kauffman M.J., J.F. Pollock, and B. Walton. 2004. Spatial structure, dispersal, and management of a recovering raptor population. American Naturalist. 164:582-597
Kauffman M.J., W.F. Frick, and J. Linthicum. 2003. Estimation of habitat-specific demography and population growth for peregrine falcons in California. Ecological Applications 13:1802-1816
Kauffman,M.J, M.A. Sanjayan, J. Lowenstein, A. Nelson, R.M. Jeo and K.R. Crooks. In review. Using remote photography methods and analyses to assess the conservation value of rangelands for Namibian carnivores. Oryx.
Kauffman, M.J. and Jules, E.S. 1999. The biology and spread of Port Orford cedar root rot: what we know and what we can do. Voice of the Wild Siskiyou, Spring 1999 Issue.
Kauffman, M.J., and E.S. Jules. In press. Understanding spatial heterogeneity is necessary for predicting invasion: host size and environment influence susceptibility to a non-native pathogen. Ecological Applications.
Kauffman, M.J., Frick, W.F., and Linthicum, J. 2003. Modeling habitat-specific differences in survival, fecundity, and population growth for peregrine falcons in California. Ecological Applications 13:1802-1816, 2003
Kluse, J. and D.F. Doak. 1999. Habitat restriction and demographic performance of a rare California endemic, Chorizanthe pungens var. hartwegiana (Polygonaceae). American Midland Naturalist, 142:244-256.
Linares, C., and D.F. Doak. 2007. Demography and viability of a long-lived marine invertebrate: the octocoral Paramuricea clavata. Ecology 88:918-928.
Loso, M.G. and D. F. Doak. 2006. The biology behind lichenometric dating curves. Oecologia. 147:223-229.
Loso, M.G. and D.F. Doak. Accepted. The biology behind lichenometric dating curves. Oecologia.
Loso, M.G., R. S. Anderson, D. F. Doak, and S. P. Anderson. 2007. A Disappearing Lake Reveals the Little Ice Age History of Climate and Glacier Response in the Icefields of Wrangell-St. Elias National Park and Preserve. Alaska Park Science 6:30-35.
Loso, M.G., R.S. Anderson, and S.P. Anderson. 2004. Post-Little Ice Age record of coarse and fine clastic sedimentation in an Alaskan proglacial lake. Geology 32:1065-1068
Marvier M.A. 1998. A mixed diet improves performance and herbivore resistance of a parasitic plant. Ecology. 791272-1280
Marvier, M. A. 1998. Parasite impacts on host communities: Plant parasitism in a California coastal prairie. Ecology 79:2616-2623.
Marvier, M.A. 1996. Parasitic plant-host interactions. Plant performance and indirect effects on parasite-feeding herbivores. Ecology 77:1398-1409.
Marvier, M.A. and Smith, D.L. 1997. Conservation implications of host use for rare parasitic plants. Conservation Biology 11: 839-848.
McGraw, J.M. and A.L. Levin. 1998. The roles of soil type and shade intolerance in limiting the distribution of the edaphic endemic Chorizanthe pungens var. hartwegiana (Polygonaceae). Madrono 45:119-127.
Mills, L.S., M. Soulé, and D.F. Doak. 1993. The keystone species concept in ecology and conservation. Bioscience 43:219-224.
Morris, W.F., D.F. Doak, M. Groom, P. Kareiva, J. Fieberg, L. Gerber, P. Murphy, and D.M. Thomson. 1999. A Practical Handbook for Population Viability Analysis. 80 pp. The Nature Conservancy, New York.
O'Malley R.E. 1999. Agricultural wetland management for conservation goals - Invertebrates in California ricelands. Pp. 857-885 In: Invertebrates in freshwater wetlands of North America: Ecology and Management.
Pollock, J.F.in press. Detecting population declines of rare species over wide areas using presence/absence data. Conservation Biology.
Press, D., D.F. Doak, and P. Steinberg. 1996. The role of local governments in rare species protection. Conservation Biology 10:1538-1548.
Sattherthwaite, W. H., K. D. Holl, G. F. Hayes, and A. L. Barber. 2007. Biological Conservation “Seed Banks in Plant Conservation: Case Study of the Santa Cruz Tarplant Restoration” 135:57-66.
Springer, A.M., J.A. Estes, G.B. van Vliet, T.M. Williams, D.F. Doak, E.M. Danner, and B. Pfister. 2008. Mammal-eating killer whales, industrial whaling, and the sequential megafaunal collapse in the North Pacific: a reply to critics of Springer et al. 2003. Marine Mammal Science in press.
Thomson, D.M . 2005. Measuring the effects of invasive species on the demography of a rare endemic plant. Biological Invasions 7: 615-624.
Thomson, D.M. 2004. Competitive interactions between the invasive European honey bee and native bumble bees. Ecology. 85:458-470.
Thomson, D.M. 2005. Matrix models as a tool for understanding invasive plant and native plant interactions. Conservation Biology 19: 917-928.
Tinker, M.T., D.F. Doak, J.A. Estes, B.B. Hatfield, M.M. Staedler, and J.L. Bodkin 2006. Incorporating diverse data and realistic complexity into demographic estimation procedures for sea otters. Ecological Applications 16(6):2293-2312.
Tinker, M.T., D.F. Doak, J.A. Estes, B.B. Hatfield, M.M. Staedler, and J.L. Bodkin. submitted. Incorporating diverse data and realistic complexity into demographic estimation procedures: a case study using the California sea otter, Enhydra lutris nerei. Ecological Applications.
Ullian, B., and E.S. Jules. 2000. Predictability begets optimism: A conservation perspective on Port-Orford-cedar and Phytophthora lateralis. Plant Disease 84:12-13.
Wilcox C.V. and B.D.Elderd. 2003.The endangered species act petitioning process: Successes and failures. Society & Natural Resources. 16:551-559
Wilcox, C.V. and Elderd B.D. 2003. The effect of density-dependent catastrophes on population persistence time. Journal of Applied Ecology 40:859-871.
